Teaching a hands-on session during ConGen 2019.

Teaching the whiteboard part of a session on raw reads-to-genotypes during ConGen 2019.

Since 2018, I have taught multiple bioinformatics, study design, and methods-based sessions at the ConGen workshop for conservation and population genomics, held at Flathead Lake Biological Station in Montana. I have posted some tutorials and code for introductory bioinformatics and genotyping with the Broad GATK pipeline on my github page.

I have also led and published a review paper on big data in conservation genomics, and am always looking for ways to increase reproducibility, efficiency, and accessibility in science. 

These are some helpful tools and resources:

• Learn Shell Commands
• Data Carpentry for Genomics
• Conda cheat sheet
• Quick-R for data visualization (among other things)
• Handy one-liners for SED
• Handy one-liners for AWK
• Git Cheatsheet
• One-based vs. Zero-based coordinate systems